rs27629684 SNP Detail

Summary

• ID
  rs27629684
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172187119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAGTACA AAACTTTTCT
  CCACAGTGGC TGCTTTCATG TTCACAGCCG CGATATAGTA GGCTCATTTA GAGGGCTTCT
  TCAAGTGAGA GTTAACCTCT ATAGTTCCTT TCTTCTTTAA AGCATTCACG TAAGCATCAG
  TCTTCCAGGT TTCACCCATT CGGCTGAGAG GAAAAACAAA GAATGCATTA GCCCTCGCTT
  R
  AAACAGCCGC CAGCCGCGCT CCACAGTCCG GAAACTCAAA ATCCTGGAAA GTTCTGAGAA
  AATGCATTCC ACAAAGAACT GGCCTGAGGT CCTGAGAACT AGGCTGATAG ACTTGGCAGG
  TCCCCAGCCC CGCCCACTCC GCTTCAGGAG GCGGAACTTA GCCAAGGAAG CGGGGCTGAG
  GGGCGGGAAC AAAAGAGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37809112	NES08702756	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	G	G	G	G	G	G		G	G	A	G		G
ss148313994	ENSMUSSNP3664498	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss320618203	CHEV_2_172170699	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27629684					SNP	A	A	A	A	G	G	G	G	G	G	G	A	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37809112	NES08702756	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172187119 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12819	CpG island 12819	116 bp proximal
Fam210b	family with sequence similarity 210, member B	366 bp upstream
Rr56171	regulatory region 56171	within coordinates
Tssr21944	transcription start site region 21944	380 bp upstream
Tssr21945	transcription start site region 21945	396 bp upstream
Tssr21946	transcription start site region 21946	429 bp upstream
Tssr27939	transcription start site region 27939	471 bp downstream