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rs27629685 SNP Detail
Summary
  • ID
    rs27629685
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:172187086 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GACCAACCTG GTTTGTGTAC
    TTTTAACTAT CTGTGAAAGT ACAAAACTTT TCTCCACAGT GGCTGCTTTC ATGTTCACAG
    CCGCGATATA GTAGGCTCAT TTAGAGGGCT TCTTCAAGTG AGAGTTAACC TCTATAGTTC
    CTTTCTTCTT TAAAGCATTC ACGTAAGCAT CAGTCTTCCA GGTTTCACCC ATTCGGCTGA
    R
    AGGAAAAACA AAGAATGCAT TAGCCCTCGC TTGAAACAGC CGCCAGCCGC GCTCCACAGT
    CCGGAAACTC AAAATCCTGG AAAGTTCTGA GAAAATGCAT TCCACAAAGA ACTGGCCTGA
    GGTCCTGAGA ACTAGGCTGA TAGACTTGGC AGGTCCCCAG CCCCGCCCAC TCCGCTTCAG
    GAGGCGGAAC TTAGCCAAGG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37809113 NES08702755 PERLEGEN MM_PANEL2 f SNP G G G G G G A G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27629685 SNP G G G G G G A G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37809113 NES08702755 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:172187086 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi12819 CpG island 12819 149 bp proximal
Fam210b family with sequence similarity 210, member B 399 bp upstream
Rr56171 regulatory region 56171 within coordinates
Tssr21944 transcription start site region 21944 413 bp upstream
Tssr21945 transcription start site region 21945 429 bp upstream
Tssr21946 transcription start site region 21946 462 bp upstream
Tssr27939 transcription start site region 27939 504 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory