rs27629687 SNP Detail

Summary

• ID
  rs27629687
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172186696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAG TTATAAGAAC AGAAGGGTTA
  M
  TTTTGGCTCA TGGGCCTAGA GGTCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37809115	NES08702768	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	A	A	A		A	A	C	A		A	A	C		A
ss45322369	mCV25119519	ABI	CRAMUS_MOUSE	f	SNP		C	C					A		A
ss148313977	ENSMUSSNP7047906	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							A
ss320618200	CHEV_2_172170276	CHEVERUD	SCREENING_POP	f	SNP													C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27629687					SNP	C	C	C	C	A	A	A	A	A	A	C	A	C	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37809115	NES08702768	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172186696 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12819	CpG island 12819	539 bp proximal
Fam210b	family with sequence similarity 210, member B	789 bp upstream
Rr56171	regulatory region 56171	104 bp proximal
Tssr21944	transcription start site region 21944	803 bp upstream
Tssr21945	transcription start site region 21945	819 bp upstream
Tssr21946	transcription start site region 21946	852 bp upstream
Tssr27939	transcription start site region 27939	894 bp downstream