rs27629690 SNP Detail

Summary

• ID
  rs27629690
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172186084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGC TTTGCTTATT GTGGTGACCC
  W
  CACTGCCCTG TCAGCCCCCT GCTCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37809118	NES08702813	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	T	T	T	A	T	A	T		T	T	A		T
ss148313934	ENSMUSSNP2133216	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss320618194	CHEV_2_172169664	CHEVERUD	SCREENING_POP	f	SNP												A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27629690					SNP	A	A	A	A	T	T	T	A	T	A	T	A	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37809118	NES08702813	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172186084 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12819	CpG island 12819	1151 bp proximal
Fam210b	family with sequence similarity 210, member B	1401 bp upstream
Rr56171	regulatory region 56171	716 bp proximal
Tssr21944	transcription start site region 21944	1415 bp upstream
Tssr21945	transcription start site region 21945	1431 bp upstream
Tssr21946	transcription start site region 21946	1464 bp upstream
Tssr27939	transcription start site region 27939	1506 bp downstream