rs27629936 SNP Detail

Summary

• ID
  rs27629936
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173056917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTACAGA CTAACCTTAC
  CTACGTTGTT TGGGATTAAA GAGATGTACT AAGGGCATGT CTGCATTCCA GCCAAGCCAC
  ACAGACCTAG AAAGTCTTTG GCCTTGTCAA AGCAGCCAGG TTTCTGGATT AAAATTCCTC
  TACATATAAT GTTTTGTTGG ATTCCACGGA CTTCATTAAA GATATCAATG GGTCACCTTC
  Y
  TCCAATAGCT GGAGACCCTA TGGGCACTGC GAATGAGGCA AGCAGGCCCT TACCAGCCAA
  GACCAGCAGC TGGTTGGCTC TCCCTCCTTA ATCCTGGCAG CAACCCTCCC TCCTGGAACA
  CCTCTCTAAA GGCTATTGTG GAGACGTGGT TGACTGGGTA GAGCACTGGC TGCTCTTCTA
  GAGGATCCAG GGCTCAGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37824763	NES08704522	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27629936					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37824763	NES08704522	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173056917 () rs orientation: forward

Symbol	Name	Function Class
Tssr22048	transcription start site region 22048	581 bp upstream
Tssr22049	transcription start site region 22049	1759 bp upstream
Tssr27969	transcription start site region 27969	1309 bp upstream
Tssr27970	transcription start site region 27970	1203 bp upstream
Tssr27971	transcription start site region 27971	640 bp downstream
Tssr27972	transcription start site region 27972	683 bp downstream
Tssr27973	transcription start site region 27973	1743 bp downstream
Tssr27974	transcription start site region 27974	1837 bp downstream
Tssr27975	transcription start site region 27975	1866 bp downstream
Zbp1	Z-DNA binding protein 1	within coordinates