rs27629937 SNP Detail

Summary

• ID
  rs27629937
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173056164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATAAGAGC CCGGCACTGT
  CCTGTCTTGC CTGCCTTCTT CAAGTGACTA AAACCCCCAA GTTGGACAAG GTGTTCACAG
  AGAGTCATAA CTAAATTCAG GCTGACCCCT GTGTCCAGGC TGACCAATTC CAGTGTGTTC
  CTCCCTCCAG ACTTTCTGTA TTTTAGCCCT CAGAAGCCTC CAGAACCCCC TCTATTGGAC
  Y
  CCAGAATCCT CTCTCCTCAG AGATGGCTAG AAGAAACCTC CTATGTGTAA ATAAATTTTA
  TTTGCCAGAT GTAATGAGAA GGAGACTTGT AGGCTCACTG CTGAATAAGC TCACCCTTTC
  TAGTTCTTTC TGAACCCTGG CTGGCTGGTT CAACTCAGTT GTTCTGAATT TTGCAAAACT
  CCTCTCCAAG TTGACTGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss37824764	NES08704556	PERLEGEN	MM_PANEL2	f	SNP	C			T	T	T		T	T	T		T		T
ss45358352	mCV22954113	ABI	CRAMUS_MOUSE	f	SNP		C	C				T	T
ss148330976	ENSMUSSNP2570257	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					T
ss320621753	CHEV_2_173039872	CHEVERUD	SCREENING_POP	f	SNP											C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs27629937					SNP	C	C	C	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37824764	NES08704556	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173056164 () rs orientation: forward

Symbol	Name	Function Class
Tssr22048	transcription start site region 22048	1334 bp upstream
Tssr27969	transcription start site region 27969	556 bp upstream
Tssr27970	transcription start site region 27970	450 bp upstream
Tssr27971	transcription start site region 27971	1393 bp downstream
Tssr27972	transcription start site region 27972	1436 bp downstream
Zbp1	Z-DNA binding protein 1	within coordinates