rs27629938 SNP Detail

Summary

• ID
  rs27629938
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173056125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACTCGAA GTTCTTCTCC
  CTCTGCCTCC CAAAGGCTGG GATAAGAGCC CGGCACTGTC CTGTCTTGCC TGCCTTCTTC
  AAGTGACTAA AACCCCCAAG TTGGACAAGG TGTTCACAGA GAGTCATAAC TAAATTCAGG
  CTGACCCCTG TGTCCAGGCT GACCAATTCC AGTGTGTTCC TCCCTCCAGA CTTTCTGTAT
  Y
  TTAGCCCTCA GAAGCCTCCA GAACCCCCTC TATTGGACTC CAGAATCCTC TCTCCTCAGA
  GATGGCTAGA AGAAACCTCC TATGTGTAAA TAAATTTTAT TTGCCAGATG TAATGAGAAG
  GAGACTTGTA GGCTCACTGC TGAATAAGCT CACCCTTTCT AGTTCTTTCT GAACCCTGGC
  TGGCTGGTTC AACTCAGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37824765	NES08704555	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27629938					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37824765	NES08704555	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173056125 () rs orientation: forward

Symbol	Name	Function Class
Tssr22048	transcription start site region 22048	1373 bp upstream
Tssr27969	transcription start site region 27969	517 bp upstream
Tssr27970	transcription start site region 27970	411 bp upstream
Tssr27971	transcription start site region 27971	1432 bp downstream
Tssr27972	transcription start site region 27972	1475 bp downstream
Zbp1	Z-DNA binding protein 1	within coordinates