rs27629939 SNP Detail

Summary

• ID
  rs27629939
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173054430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTTCCA TACTCGTGTA
  TGATGGACAC AGCTGGAGCC TCTCCTGAAA TCCCTGTAGC AGGCGCTCTA CCTGTGTGTC
  CTAGCCACAG TGTCTCCCTG GGGGGATGAT GGAAACTCCC ACTCTCTCCC TACCCTGCCC
  CTGTTGCCAG AGTCCCGTAG AGTCCTTGGT GCTGAGCCCC AAGCTTTTCT CACTTCAGCA
  R
  TGCTTATAAA ATGCCCCATA TGGTTGGTTG ACCTCTAATG ACATTATTGA AGATTTAAGA
  TATGACCTTT TGTTTAAAAG CTGCCTTCTA CACTGTCATT TCTTCCAAAA GCTGAGGTGT
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA ATAGCTCACA CCAGCCAAGC CCAGAGCCTG
  TACCACGTGC CACAGGGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss37824766	NES08704649	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	A	A	A		A	A	A	A		A		A
ss45279457	mCV22954098	ABI	CRAMUS_MOUSE	f	SNP		G						A		A
ss148330943	ENSMUSSNP6617772	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								A
ss320621749	CHEV_2_173038138	CHEVERUD	SCREENING_POP	f	SNP													G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs27629939					SNP	G	G	G	G	A	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37824766	NES08704649	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173054430 () rs orientation: forward

Symbol	Name	Function Class
Tssr27968	transcription start site region 27968	828 bp upstream
Tssr27969	transcription start site region 27969	1163 bp downstream
Tssr27970	transcription start site region 27970	1277 bp downstream
Zbp1	Z-DNA binding protein 1	within coordinates