rs27629940 SNP Detail

Summary

• ID
  rs27629940
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173054382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAAGAGG GTGCAAGGAA
  AGATTCAGGA GCTGCTTGCA GCTGGCCACA GCCTTCCATA CTCGTGTATG ATGGACACAG
  CTGGAGCCTC TCCTGAAATC CCTGTAGCAG GCGCTCTACC TGTGTGTCCT AGCCACAGTG
  TCTCCCTGGG GGGATGATGG AAACTCCCAC TCTCTCCCTA CCCTGCCCCT GTTGCCAGAG
  Y
  CCCGTAGAGT CCTTGGTGCT GAGCCCCAAG CTTTTCTCAC TTCAGCAATG CTTATAAAAT
  GCCCCATATG GTTGGTTGAC CTCTAATGAC ATTATTGAAG ATTTAAGATA TGACCTTTTG
  TTTAAAAGCT GCCTTCTACA CTGTCATTTC TTCCAAAAGC TGAGGTGTGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37824767	NES08704648	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	T	T	T	T	T	T		T	T		T
ss148330939	ENSMUSSNP1801447	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
ss320621748	CHEV_2_173038090	CHEVERUD	SCREENING_POP	f	SNP												C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27629940					SNP	C	C	C	C	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37824767	NES08704648	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173054382 () rs orientation: forward

Symbol	Name	Function Class
Tssr27968	transcription start site region 27968	780 bp upstream
Tssr27969	transcription start site region 27969	1211 bp downstream
Tssr27970	transcription start site region 27970	1325 bp downstream
Zbp1	Z-DNA binding protein 1	within coordinates