rs27629941 SNP Detail

Summary

• ID
  rs27629941
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173054241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGACTC CAGAATGAGC
  TAGAGAATAA TATTCCATTG AGTTCTTTGT CTTGAAGACA TAGGAGGTGT CTCTTATCAA
  CAGCACTGAA CTTCCCTGGG AGCTTGCTGA CACCTGAACC CAGACCCCAT CCTGGGGGCC
  TGAGAAAGAG GGTGCAAGGA AAGATTCAGG AGCTGCTTGC AGCTGGCCAC AGCCTTCCAT
  M
  CTCGTGTATG ATGGACACAG CTGGAGCCTC TCCTGAAATC CCTGTAGCAG GCGCTCTACC
  TGTGTGTCCT AGCCACAGTG TCTCCCTGGG GGGATGATGG AAACTCCCAC TCTCTCCCTA
  CCCTGCCCCT GTTGCCAGAG TCCCGTAGAG TCCTTGGTGC TGAGCCCCAA GCTTTTCTCA
  CTTCAGCAAT GCTTATAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37824768	NES08704647	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27629941					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37824768	NES08704647	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173054241 () rs orientation: forward

Symbol	Name	Function Class
Tssr27968	transcription start site region 27968	639 bp upstream
Tssr27969	transcription start site region 27969	1352 bp downstream
Tssr27970	transcription start site region 27970	1466 bp downstream
Zbp1	Z-DNA binding protein 1	within coordinates