rs27629942 SNP Detail

Summary

• ID
  rs27629942
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173054217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACAAATAA TCGCAGGGGA
  CTCTTGTGTG ACTCCAGAAT GAGCTAGAGA ATAATATTCC ATTGAGTTCT TTGTCTTGAA
  GACATAGGAG GTGTCTCTTA TCAACAGCAC TGAACTTCCC TGGGAGCTTG CTGACACCTG
  AACCCAGACC CCATCCTGGG GGCCTGAGAA AGAGGGTGCA AGGAAAGATT CAGGAGCTGC
  Y
  TGCAGCTGGC CACAGCCTTC CATACTCGTG TATGATGGAC ACAGCTGGAG CCTCTCCTGA
  AATCCCTGTA GCAGGCGCTC TACCTGTGTG TCCTAGCCAC AGTGTCTCCC TGGGGGGATG
  ATGGAAACTC CCACTCTCTC CCTACCCTGC CCCTGTTGCC AGAGTCCCGT AGAGTCCTTG
  GTGCTGAGCC CCAAGCTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37824769	NES08704646	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27629942					SNP	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37824769	NES08704646	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173054217 () rs orientation: forward

Symbol	Name	Function Class
Tssr27968	transcription start site region 27968	615 bp upstream
Tssr27969	transcription start site region 27969	1376 bp downstream
Tssr27970	transcription start site region 27970	1490 bp downstream
Zbp1	Z-DNA binding protein 1	within coordinates