rs27629943 SNP Detail

Summary

• ID
  rs27629943
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173053755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATAGATA TATAGATAAG
  AAGCCACTGA GTGTAAGATG ACCCCAACTT TTCATGACAC AATTTGAGAG ACGGGAATGT
  GTTCAGAGCA GAGAACTGCA GTAACCATCT CACTGTGTCC TGCTGAGAGA GAGAGGGAGC
  CGAATTATTC TCATACAAAA GGTTTTGATC TCATTGAGAA GGAGCAAAAT TAGTGAGAGT
  R
  CAGGTGAGGT GTGGTCCTTG GGTCTCACTC TGAGAAAGGC CGTGCCTAAG GCATGCCTGA
  GGAGGTGAGG CAGTTGCTCT CTCCTTGGAG GACCAGGTCC CCTCTCAGTC CCCCTCAGCC
  AGGACCCTCC TCTTACCTGG CTCACCACAG GCTTTCTCTC TTACTATGAC ATTCCCGTGA
  CCAATCTGGA TGGCGTTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37824770	NES08704645	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	G	G		G	G	G	G		G	G		G
ss45222308	mCV22954091	ABI	CRAMUS_MOUSE	f	SNP		A	A				G		G
ss148330934	ENSMUSSNP4514548	ENSEMBL	ENSEMBL_Sanger	f	SNP			A						G
ss320621747	CHEV_2_173037463	CHEVERUD	SCREENING_POP	f	SNP												A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27629943					SNP	A	A	A	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37824770	NES08704645	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173053755 () rs orientation: forward

Symbol	Name	Function Class
Tssr27968	transcription start site region 27968	153 bp upstream
Tssr27969	transcription start site region 27969	1838 bp downstream
Tssr27970	transcription start site region 27970	1952 bp downstream
Zbp1	Z-DNA binding protein 1	within coordinates