rs27633257 SNP Detail

Summary

• ID
  rs27633257
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:170190527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGGGGTCA GGGGTCAGAG
  GCCAGGGTGG GACTTGCTAT TCTAGTTCAT TCTACATCCC TAGCCACTGT CAATAGCTCA
  TTCTTTCAGG TTCTAACAAA ATGGTGCCCT GATTTGTTCC CCAGCACTAT CTGAAGTGAC
  CTTACTCTGT TTGACCTGAC ATCCTCCTCC TCTGTGGGTT CAGTCTGCTG CCTCCTCGGG
  R
  CCATTCGAGT GCCCCGGCAT GTGGAGGTTG CACCTCACTA CTGTCCCAGT GTGGCAGGTG
  GATGCGTGCA GTCTTGCACC ACTACTGTCT CACCCTTTCC CCCACGGGTT GCTGTTGGTC
  ATGGTGTTTA TCACAGCAAT AGAAAGCAAA CTGCAACAGA ATTGCAGCTG TTACCATGAC
  CTCAATTTGA CAACGGGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37818088	NES08714665	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27633257					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818088	NES08714665	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170190527 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcas1	brain enriched myelin associated protein 1			Intron
				Noncoding-Transcript-Variant
Rr571417	regulatory region 571417			864 bp distal
Rr571418	regulatory region 571418			1223 bp distal
Rr571419	regulatory region 571419			997 bp distal
Rr571420	regulatory region 571420			1178 bp proximal
Tssr21927	transcription start site region 21927			686 bp upstream
Tssr27919	transcription start site region 27919			634 bp downstream