rs27633259 SNP Detail

Summary

• ID
  rs27633259
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:170190431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGATTTTA AAATGGGAGT
  GCTCAAACCC AACTCTGAGA GGTGCTCCCA GATAAAGTGT GCTCAAAGTG TGACACATAT
  TAGAGCAGTC CTGGGGTCGG GGGTCAGGGG TCAGAGGCCA GGGTGGGACT TGCTATTCTA
  GTTCATTCTA CATCCCTAGC CACTGTCAAT AGCTCATTCT TTCAGGTTCT AACAAAATGG
  Y
  GCCCTGATTT GTTCCCCAGC ACTATCTGAA GTGACCTTAC TCTGTTTGAC CTGACATCCT
  CCTCCTCTGT GGGTTCAGTC TGCTGCCTCC TCGGGACCAT TCGAGTGCCC CGGCATGTGG
  AGGTTGCACC TCACTACTGT CCCAGTGTGG CAGGTGGATG CGTGCAGTCT TGCACCACTA
  CTGTCTCACC CTTTCCCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37818090	NES08714663	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27633259					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818090	NES08714663	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170190431 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcas1	brain enriched myelin associated protein 1			Intron
				Noncoding-Transcript-Variant
Rr571417	regulatory region 571417			768 bp distal
Rr571418	regulatory region 571418			1127 bp distal
Rr571419	regulatory region 571419			901 bp distal
Rr571420	regulatory region 571420			1274 bp proximal
Tssr21927	transcription start site region 21927			782 bp upstream
Tssr27919	transcription start site region 27919			730 bp downstream