rs27633261 SNP Detail

Summary

• ID
  rs27633261
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:170189972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCAACTGG TCAACCTGCT
  AAGCCATTTT TACACTTAAA TGCCAGGAAA GACTGGACCA GAGACGTAAA TAATACACCT
  CGATCTACAA CAATTCAGGT TGAAGTTGTA GGCAGAATTT CATTGGCTGA CCAGAAGAAG
  AAGAAGAAAA ATATATACAC AGTGTGGGTC TGGACAGTAG ATGGAGTGGG AGGAGAACCC
  R
  GTGGGAACTG GGTGATTTTG TTTACTTGGA TTTTCCAACT GGTCCGATGG AGACCGGGTC
  CGTTTGCACC TGAGCATCCG ACATCCGCTT TGGTCCCTGG AGAAAAACAT AAAGCAGCCA
  GCGTGAGGCC AACAGCAGCG AGGGGGACTT ATCACGTGCT TATTCTACGT AAATATGACA
  GTGCTCATGG GCGGATGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37818092	NES08714661	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27633261					SNP	A	A	A	A	A	G	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818092	NES08714661	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170189972 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcas1	brain enriched myelin associated protein 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr571416	regulatory region 571416			1779 bp distal
Rr571417	regulatory region 571417			309 bp distal
Rr571418	regulatory region 571418			668 bp distal
Rr571419	regulatory region 571419			442 bp distal
Rr571420	regulatory region 571420			1733 bp proximal
Tssr21927	transcription start site region 21927			1241 bp upstream
Tssr27919	transcription start site region 27919			1189 bp downstream