rs27633263 SNP Detail

Summary

• ID
  rs27633263
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:170189874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCATCTT ACTGGATACC
  TGCCATTTTT TCATAACTTA ACACAAATGC CTTTATCTAC CTACTTCCTC CCCCACCTGG
  CACTCACCAG CTCCCTTGGA TCAACTGGTC AACCTGCTAA GCCATTTTTA CACTTAAATG
  CCAGGAAAGA CTGGACCAGA GACGTAAATA ATACACCTCG ATCTACAACA ATTCAGGTTG
  M
  AGTTGTAGGC AGAATTTCAT TGGCTGACCA GAAGAAGAAG AAGAAAAATA TATACACAGT
  GTGGGTCTGG ACAGTAGATG GAGTGGGAGG AGAACCCAGT GGGAACTGGG TGATTTTGTT
  TACTTGGATT TTCCAACTGG TCCGATGGAG ACCGGGTCCG TTTGCACCTG AGCATCCGAC
  ATCCGCTTTG GTCCCTGGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37818094	NES08714659	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27633263					SNP	A	A	A	A	A	C	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818094	NES08714659	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170189874 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcas1	brain enriched myelin associated protein 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr571416	regulatory region 571416			1681 bp distal
Rr571417	regulatory region 571417			211 bp distal
Rr571418	regulatory region 571418			570 bp distal
Rr571419	regulatory region 571419			344 bp distal
Rr571420	regulatory region 571420			1831 bp proximal
Tssr21927	transcription start site region 21927			1339 bp upstream
Tssr27919	transcription start site region 27919			1287 bp downstream