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rs27633264 SNP Detail
Summary
  • ID
    rs27633264
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:170189826 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAGAGTGGCT ACAAATCCAG
    ATATTCTTTG TCTCATAAGC ACTTTTCTTC TGCATCTTAC TGGATACCTG CCATTTTTTC
    ATAACTTAAC ACAAATGCCT TTATCTACCT ACTTCCTCCC CCACCTGGCA CTCACCAGCT
    CCCTTGGATC AACTGGTCAA CCTGCTAAGC CATTTTTACA CTTAAATGCC AGGAAAGACT
    R
    GACCAGAGAC GTAAATAATA CACCTCGATC TACAACAATT CAGGTTGAAG TTGTAGGCAG
    AATTTCATTG GCTGACCAGA AGAAGAAGAA GAAAAATATA TACACAGTGT GGGTCTGGAC
    AGTAGATGGA GTGGGAGGAG AACCCAGTGG GAACTGGGTG ATTTTGTTTA CTTGGATTTT
    CCAACTGGTC CGATGGAGAC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37818095 NES08714658 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G G G G G A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27633264 SNP G G G G G G G G G G G G G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37818095 NES08714658 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:170189826 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Bcas1 brain enriched myelin associated protein 1 mRNA-UTR
Rr571416 regulatory region 571416 1633 bp distal
Rr571417 regulatory region 571417 163 bp distal
Rr571418 regulatory region 571418 522 bp distal
Rr571419 regulatory region 571419 296 bp distal
Rr571420 regulatory region 571420 1879 bp proximal
Tssr21927 transcription start site region 21927 1387 bp upstream
Tssr27919 transcription start site region 27919 1335 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory