rs27633269 SNP Detail

Summary

• ID
  rs27633269
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:170189257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAAGTAT TCGCATAATC
  TGTCAATTTT TATTAACTGG GTTAGGGGAG GGTTTTTATC AGAGCACATT ATGAAAACAT
  TAGGACATTA CAGACAGGCG TGAGATAAGC GTCAGACCGA ACAGATGAAG CAAGTCCCTC
  AGCCATCTGA GAAACATTAA TAATGAAATA GTGCAGAAAC AAATCTTTGT TAGGGGTACC
  R
  GATGCAAAGG GAAAAAGCAG AGATCCTGGC GCCCCCTTGT GTTGCAAAAT GAACCTGCAC
  CTTTATTTCA TTTTGCTGTT TCCCTTTTGA AGTTGGGAAT TCATGCCCTT GTCCCTGTGC
  CCCAGAAGTA ATTGTTTCCC CAAATCCTAG CAAGCCCTCT CCAGCAAATC ACTTCCCCAT
  TCACTGATAA CTTCCAAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37818100	NES08714653	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27633269					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818100	NES08714653	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170189257 () rs orientation: forward

Symbol	Name	Function Class
Bcas1	brain enriched myelin associated protein 1	mRNA-UTR
Rr571416	regulatory region 571416	1064 bp distal
Rr571417	regulatory region 571417	within coordinates
Rr571418	regulatory region 571418	26 bp proximal
Rr571419	regulatory region 571419	252 bp proximal
Tssr21927	transcription start site region 21927	1956 bp upstream
Tssr27919	transcription start site region 27919	1904 bp downstream