rs27633274 SNP Detail

Summary

• ID
  rs27633274
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170188785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCTTCCC AGTGTGGCCA
  CATGGAAGAA TCTGTTTTTT AATATTAATT TGGCTCTTTT AATTGGCTTA TGAAAGACTG
  GAGGTCAAAC CTGGTTTGCT AGGGCAGAGG CTGTGAACTG ATCATATGTG CACACCAATG
  TATTCCTGCC TATATGAGTT TGCAGTATGA ATGTTCACGA ACACAGAGTC GTGTGTGAGA
  R
  TATATCTGGA CACGTGTGTG GGCATTCATA GTGTACACTG TCTTCCAGCT GCTTACAAAG
  ACGCAGCCCT TGTAGAGAGC GTTGTCAGCG AGCTGCACTT GAAGTTTAGA ATCAAAAGCT
  TTTCTAAAAT GTAATATTTT TTTATTAAAT TGGGAAAAGA AAGGTACAAT ACAGATGACT
  ATCAGTCAAT CATATGGTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37818105	NES08714648	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27633274					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818105	NES08714648	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170188785 () rs orientation: forward

Symbol	Name	Function Class
Bcas1	brain enriched myelin associated protein 1	126 bp downstream
Rr571416	regulatory region 571416	592 bp distal
Rr571417	regulatory region 571417	282 bp proximal
Rr571418	regulatory region 571418	498 bp proximal
Rr571419	regulatory region 571419	724 bp proximal