rs27633280 SNP Detail

Summary

• ID
  rs27633280
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170187888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCAACTCA GAAGGACTGG
  GTAGTGTGGC CACTTCTCCC CCTCTTCCAG TTTTCCCAAG GTGCTTTTAG CACCCTACCC
  CAATCTTTCC AGCAAAACCT TCTAGCATGG TACGGGACTC TGAACCCGGC AAGGAACAGA
  CAGTGATTTC CAAATCAGGT CCTGAGGATC CAGGAAACAA GTTTAGCTTA AAGGAAACCA
  Y
  TGCTGATCTG TATTTGAAAC CCAGAATCCA GTCAGTGTGC TGGCAGGCCC CAGGCCCCAG
  GCCACACTGC CTTACTTCCT CCATATCTGG GGGCCTCACA GACATGGCTG CTCTCTGGAT
  ACATTTACCA GTTTTCCAGT CTGTTCTGTC CTAGGTGTGG TTCCTGTGCT CTCATTCACG
  CTAGGACAAG ATAGATGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37818111	NES08714723	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27633280					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818111	NES08714723	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170187888 () rs orientation: forward

Symbol	Name	Function Class
Bcas1	brain enriched myelin associated protein 1	1023 bp downstream
Rr571415	regulatory region 571415	1699 bp distal
Rr571416	regulatory region 571416	within coordinates
Rr571417	regulatory region 571417	1179 bp proximal
Rr571418	regulatory region 571418	1395 bp proximal
Rr571419	regulatory region 571419	1621 bp proximal