rs27636134 SNP Detail

Summary

• ID
  rs27636134
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:169823354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTTGAAG AACCACTGAA
  GACTATAAGC CACTCTGTTG CCCAGGGGTT ATAGCTCAGA CCCACAGAAA TAAATCAGAT
  GGACCACCGA GTACCATTGT CTGGGGACAT GGAGATTCAT GCAGATTAAA GCATCTTCTG
  CTCTCCATTT TAATTGTAAC GTGAGCCACA GAATACTTAC CCTTTGAGTC AATAAGTATT
  K
  ACTGCTATAC ACCGAGCTCT GGGTACCCAA GGGTGATGTT AACCGATGGG ATCATTTCCT
  TTATAAGAGG TTGACAGAGC CTGTGCTGAG CCACTTTGCC TTGCTGTAAC AAACAGCTCA
  GGAAAAGCAA CTTGGAAGAG GTTTGTTTTG GTCCCATGGT TCTACTGGTT TCAGCCCAGG
  GTCACTTGGC CCTGGGACTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37819283	NES08711265	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27636134					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37819283	NES08711265	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169823354 () rs orientation: forward

Symbol	Name	Function Class
Rr571284	regulatory region 571284	1504 bp proximal
Tshz2	teashirt zinc finger family member 2	Intron