rs27636359 SNP Detail

Summary

• ID
  rs27636359
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169345552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGGGAGA TAGGTCAGCA
  CTAGGGCCTT TAGTGTCGGG ATTCATATAC CCCTGACACC AAAAGCCCCT CCTGATTGCT
  CTCCAAACAG CAGTAGCTTT TATTTCTAGA GTTGGCTAGA GATTGCTAAG CAATTGCCAT
  TTCAGAAAAC TTTTTTTTTT TTCAGGAATG AAAATAATGT GGCCCATGAT GCTTTTCCAA
  K
  GAGCTGTTTG GCCTCCGTCA CCAGGACAAC AGCTTGTGAA CCTACCCTCA CCTGGAGAGT
  TACTCTGGGG TCTGGGGCCA TGGATGTGAC ACTTGGCTCT ATTCCTGGAC ACGTGACTTG
  TGAGTGGCAC TCATGACCTA CAAGTACAAA CCACCCGGAT AGAGTGAATG AGTCTGTTTA
  CCCTGCTCTG AATCTCACAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37822190	NES08721281	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27636359					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37822190	NES08721281	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169345552 () rs orientation: forward

Symbol	Name	Function Class
Gm14249	predicted gene 14249	within coordinates
Gm74752	predicted gene, 74752	1378 bp downstream
Rr571204	regulatory region 571204	1434 bp distal
Rr571205	regulatory region 571205	102 bp distal