rs27636367 SNP Detail

Summary

• ID
  rs27636367
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169344771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAAGAGA AAGAGAAAGA
  GAGAGAGAAA GAGAAAGAAA AAGAAAAGCT CTCTGACAAA AGAAGCCATT GGTCATGACC
  TCAGGAGAAC GGAAATACAG AATAAAAACA ATTTCAATCT GTGAAGTCCA GTCAATGAGA
  GCAAACAGGC CACCCAGCAA GGGCATTTCC TTTTTAATGG TTACCTCTGA GTAGACTGAA
  M
  AGTGCATGCG TGCCTATGTG CACGTGTGCA CGCGCTTTGA TTTTTCTCCT CTTTTAACTG
  GGCGTGAATA CATGAAGGCA CATGTCACCC TGATTCCATC ACCCCAACTA CGTGTGCTAA
  CTGTCACCAG TATCTTCCTT TGGGAGTGTG TGAATCCGCT CTCCCCCATT TTCTCACACG
  GCAGTTCCTC CCGTGAGCAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37822198	NES08721274	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27636367					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37822198	NES08721274	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169344771 () rs orientation: forward

Symbol	Name	Function Class
Gm14249	predicted gene 14249	within coordinates
Rr571204	regulatory region 571204	653 bp distal
Rr571205	regulatory region 571205	within coordinates