rs27636371 SNP Detail

Summary

• ID
  rs27636371
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169344497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAGCCAT CACAGTCCCT
  AAGAAAGTCA ACGCTGTGTG GGTTTTCCTG CCCGGTGAAA TGGTTTCCTT GTTCCTAACT
  GGGCCTTATG TCCTTGGGAA GAAACTAAAA AAAAACCTGA GTTGCCTCCA GTTTAGGAGA
  TGCTGAAGTG GGAGACTAGA CAGATGTGGG TTTCTGAAGG AAAGAACGAT TTGTCCAGCA
  Y
  ACTGCCTACC TTCCCTGAAA AAGAAGTGAA AGAGAAAGAG AAGGAGGAGG AGGAGAAGGA
  GGAGGTGGAG AAAGAGAAAG AGAAAGAGAA AGAGAGAGAG AAAGAGAAAG AAAAAGAAAA
  GCTCTCTGAC AAAAGAAGCC ATTGGTCATG ACCTCAGGAG AACGGAAATA CAGAATAAAA
  ACAATTTCAA TCTGTGAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37822202	NES08721318	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27636371					SNP	T	T	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37822202	NES08721318	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169344497 () rs orientation: forward

Symbol	Name	Function Class
Gm14249	predicted gene 14249	within coordinates
Rr571204	regulatory region 571204	379 bp distal
Rr571205	regulatory region 571205	168 bp proximal