rs27636373 SNP Detail

Summary

• ID
  rs27636373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169344357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATGGCTT TATTAGAGGT
  TTTTGGTAAT TATCTTCTTG CTGTCGTGAA GTCTTTTCCT GGGAGCCCAC AGAGGGGACC
  ACCGAACATG TCTATCATTT CTGAGGCATG TGGGAACCAC CCAGAACATC ACCCTGGTTC
  CTTTAGCCAT CACAGTCCCT AAGAAAGTCA ACGCTGTGTG GGTTTTCCTG CCCGGTGAAA
  Y
  GGTTTCCTTG TTCCTAACTG GGCCTTATGT CCTTGGGAAG AAACTAAAAA AAAACCTGAG
  TTGCCTCCAG TTTAGGAGAT GCTGAAGTGG GAGACTAGAC AGATGTGGGT TTCTGAAGGA
  AAGAACGATT TGTCCAGCAT ACTGCCTACC TTCCCTGAAA AAGAAGTGAA AGAGAAAGAG
  AAGGAGGAGG AGGAGAAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37822204	NES08721316	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27636373					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37822204	NES08721316	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169344357 () rs orientation: forward

Symbol	Name	Function Class
Gm14249	predicted gene 14249	within coordinates
Rr571204	regulatory region 571204	239 bp distal
Rr571205	regulatory region 571205	308 bp proximal