rs27636376 SNP Detail

Summary

• ID
  rs27636376
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169344093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAGTCTG GCAGATAGAT
  TAAAAAAATC CATCAGACCT GTAAAGCCGT AACCGGCCAA ATTTCCCCAG GGGGCCTTTC
  TGTATGGTAC TTATCATTTC CAGGGCCGTG AGAGCTCTGC TTGTTCCAGG CGTCATTACC
  CTACATAGGA CAGCAATGCC AATGTGGGAG CCATCTTAGA CGCATCACCA GGGGCAGGCA
  Y
  AGGAGGCACA AGCCTGTGTG CATGCTGGCA GTTTTTGGCC TGCAACTTCG AGGTGTGCTA
  ATGGTCATGG CTTTATTAGA GGTTTTTGGT AATTATCTTC TTGCTGTCGT GAAGTCTTTT
  CCTGGGAGCC CACAGAGGGG ACCACCGAAC ATGTCTATCA TTTCTGAGGC ATGTGGGAAC
  CACCCAGAAC ATCACCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37822207	NES08721313	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27636376					SNP	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37822207	NES08721313	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169344093 () rs orientation: forward

Symbol	Name	Function Class
Gm14249	predicted gene 14249	within coordinates
Rr571204	regulatory region 571204	within coordinates
Rr571205	regulatory region 571205	572 bp proximal