rs27636381 SNP Detail

Summary

• ID
  rs27636381
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169343349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAACTTAA CATGTGATGG
  GTGAATTTGT TAAGCTGGAG ATGAGAGAAT ACTGGTCCAA GAGAGAAATC AAATAAATGG
  TGGTAACGAA AAAAAATCAA CTGGGGATAC ATTTGGAAGT TGCTGACTGT TGGTGCTGGT
  TAGAGCCATG AACTCAAAGA AACTCCCTAA AGGAGGGTTG GATGCTATGA GTGAGAACCC
  Y
  TCTTTGAGAT GGGCCAGCAG ACTGTGCCCA GAGCTTGTAC CACCATGAGA TTGGTGACAG
  CCCTCAGAAG CTAAGATGAG AAAGAGAAAT GTCTGGTGGG CTGTTTCTAA TGAAATCAAA
  TTCCCAGTTG TTTCCCATTA GGTCATTTTG TCATTTATTC AGCTTTGCTA AATCCATACC
  TTTGTTTTGA TGTACACCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37822212	NES08721308	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	T	T		T	T	C
ss148286646	ENSMUSSNP6134711	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27636381					SNP	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37822212	NES08721308	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169343349 () rs orientation: forward

Symbol	Name	Function Class
Gm14249	predicted gene 14249	within coordinates
Rr571204	regulatory region 571204	274 bp proximal
Rr571205	regulatory region 571205	1316 bp proximal