rs27636389 SNP Detail

Summary

• ID
  rs27636389
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169342832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAT CATATTGGGA TATTAGCAGA
  R
  TCTGCTGAGA GTTTTGAGAT AACCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37822220	NES08721351	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	G	G	G		G	G	G	A
ss45341701	mCV23767153	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					A		G
ss148286593	ENSMUSSNP1726140	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss320613133	CHEV_2_169326412	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27636389					SNP	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37822220	NES08721351	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169342832 () rs orientation: forward

Symbol	Name	Function Class
Gm14249	predicted gene 14249	within coordinates
Rr571204	regulatory region 571204	791 bp proximal
Rr571205	regulatory region 571205	1833 bp proximal