rs27636768 SNP Detail

Summary

• ID
  rs27636768
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172743117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCGCCCCT GCAGGAATAA
  CTTCCTGAAG GCTGCAGCCT GCTTGTGTAC TCTTTGGACT CTAGAAGGTG AAAACCTTAA
  CTCGTCTGAG GTTGTCCTCT GGCCTGCATG GTAGCATGTG CTTGTGTACA CACAGGCATG
  CAAACACACA CACGCACACA CACACACACA CACACACACA CACACACACA CACAGCATCA
  M
  GACACAGAAG GTCACCTTCT CCCCTCCAGA AACCCAGGCT TCCCTAGAGC CCTGCTCTGT
  ACGGTGTGAA CCTGGGCTGA CCCTGATGCA CGCACTGGGA TGTGAATAAT TAACCACCTG
  GCTGTGGACT GCAAGCTGCT GGATCCCAGC ACCACCTCCC AAGGAAACCT GTGAACTGCA
  GAAACCTAAC CCTGGAGGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37825992	NES08714891	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27636768					SNP	A	A	A	A	A	C	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37825992	NES08714891	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172743117 () rs orientation: forward

Symbol	Name	Function Class
Bmp7	bone morphogenetic protein 7	Intron
Rr571767	regulatory region 571767	within coordinates
Rr571768	regulatory region 571768	284 bp distal
Rr571769	regulatory region 571769	1946 bp proximal
Tssr27952	transcription start site region 27952	648 bp downstream