rs27636906 SNP Detail

Summary

• ID
  rs27636906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172708339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGTGCTA TGTTGGCCCC
  AGGAGACTCT GACACTTACC TTCCAGAAAG ACTCTTGCAG AGGAAACGGC AATGATCCCG
  TGAGAGGCTC CTACAGAGGT ACCCCATGGC ACTGACACAC CTCCCGGCTT CCACACTGGT
  CACCAGGTTC AGGGAGGGGA AGGGAGGGAC CACAATGGAT AAGCTGCTTG TTCAGGGCAA
  Y
  GTCATGGGGA GCCTAGTTCA AGGTCATGTC TGGAGATGCA GACCCTTAAG CTGTCTGGAA
  GCAGGAGAGA GACTTCATGC TGAGCTCACA CACAGGGCAG AAACTCAGCC TGGGTTCAGA
  GACTAGCATA CAGGGCTGGG GAAGGGTGCC TGGGTGTCGA GCCATCAATC CCTGCTTCTT
  AAGCAGCCCC AGGACCTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37826130	NES08710330	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27636906					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37826130	NES08710330	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172708339 () rs orientation: forward

Symbol	Name	Function Class
Bmp7	bone morphogenetic protein 7	1466 bp downstream
Gm74706	predicted gene, 74706	within coordinates
Rr374298	regulatory region 374298	within coordinates
Rr571762	regulatory region 571762	1783 bp distal
Rr571763	regulatory region 571763	767 bp distal
Rr571764	regulatory region 571764	249 bp proximal