rs27636907 SNP Detail

Summary

• ID
  rs27636907
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172708263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTCCTTG GATATGGTGA
  GCATTGTTCC TAAAGAGAAG GCTTTGTGCA GGCAGGGTCC AGGTTTCAAA GTAGTAGAAA
  GTGCTATGTT GGCCCCAGGA GACTCTGACA CTTACCTTCC AGAAAGACTC TTGCAGAGGA
  AACGGCAATG ATCCCGTGAG AGGCTCCTAC AGAGGTACCC CATGGCACTG ACACACCTCC
  Y
  GGCTTCCACA CTGGTCACCA GGTTCAGGGA GGGGAAGGGA GGGACCACAA TGGATAAGCT
  GCTTGTTCAG GGCAACGTCA TGGGGAGCCT AGTTCAAGGT CATGTCTGGA GATGCAGACC
  CTTAAGCTGT CTGGAAGCAG GAGAGAGACT TCATGCTGAG CTCACACACA GGGCAGAAAC
  TCAGCCTGGG TTCAGAGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37826131	NES08710327	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27636907					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37826131	NES08710327	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172708263 () rs orientation: forward

Symbol	Name	Function Class
Bmp7	bone morphogenetic protein 7	1542 bp downstream
Gm74706	predicted gene, 74706	within coordinates
Rr374298	regulatory region 374298	within coordinates
Rr571762	regulatory region 571762	1707 bp distal
Rr571763	regulatory region 571763	691 bp distal
Rr571764	regulatory region 571764	325 bp proximal