rs27636913 SNP Detail

Summary

• ID
  rs27636913
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172707977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCCTGTC CTGAGCAGGT
  CTCCTCTGTG TAGAGCAGTC AGGAGCAGAC CACCCTGAGT CCTTCCCAAG TGTTCCAAGG
  AGCTGTGCAA TGAGCGATCG ATCCTCTAAA GAATTTGGGG GGACAGGTAC CACACACCTA
  ACTGGCGTCT TGGAAGGAAC CCTGCACTCA GCATCACCCC ACAGTTGGGT TTACTGTTGA
  Y
  TGACAGTCTC TGTGTTGGTT CCTGGTATAG ACAATGAAGC AGCATTTCAT GAGGCTTTCA
  AGAGTTCTGC CATCTGTCCA GCAAGTCCTT CCTTGGATAT GGTGAGCATT GTTCCTAAAG
  AGAAGGCTTT GTGCAGGCAG GGTCCAGGTT TCAAAGTAGT AGAAAGTGCT ATGTTGGCCC
  CAGGAGACTC TGACACTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37826137	NES08710315	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27636913					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37826137	NES08710315	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172707977 () rs orientation: forward

Symbol	Name	Function Class
Bmp7	bone morphogenetic protein 7	1828 bp downstream
Gm56447	predicted gene, 56447	1843 bp upstream
Gm74706	predicted gene, 74706	within coordinates
Rr374298	regulatory region 374298	within coordinates
Rr571762	regulatory region 571762	1421 bp distal
Rr571763	regulatory region 571763	405 bp distal
Rr571764	regulatory region 571764	611 bp proximal