rs27636917 SNP Detail

Summary

• ID
  rs27636917
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172707860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTGCTGT GTGCAAACGG
  TTGTGTCTGA ATAGCTGGGC CCTGTCCAGG AAGACCATTC ATACCTGTGC CATTCCCACT
  ACGGAAGCTG GGGACAATGC AACTCTCGGG CTTGCCCTGA GCCTGTCCTG AGCAGGTCTC
  CTCTGTGTAG AGCAGTCAGG AGCAGACCAC CCTGAGTCCT TCCCAAGTGT TCCAAGGAGC
  Y
  GTGCAATGAG CGATCGATCC TCTAAAGAAT TTGGGGGGAC AGGTACCACA CACCTAACTG
  GCGTCTTGGA AGGAACCCTG CACTCAGCAT CACCCCACAG TTGGGTTTAC TGTTGACTGA
  CAGTCTCTGT GTTGGTTCCT GGTATAGACA ATGAAGCAGC ATTTCATGAG GCTTTCAAGA
  GTTCTGCCAT CTGTCCAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37826141	NES08710311	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27636917					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37826141	NES08710311	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172707860 () rs orientation: forward

Symbol	Name	Function Class
Bmp7	bone morphogenetic protein 7	1945 bp downstream
Gm56447	predicted gene, 56447	1726 bp upstream
Gm74706	predicted gene, 74706	within coordinates
Rr1066	regulatory region 1066	1900 bp downstream
Rr374298	regulatory region 374298	within coordinates
Rr407149	regulatory region 407149	1935 bp distal
Rr571762	regulatory region 571762	1304 bp distal
Rr571763	regulatory region 571763	288 bp distal
Rr571764	regulatory region 571764	728 bp proximal