rs27636918 SNP Detail

Summary

• ID
  rs27636918
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172707247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGGCCCC AGGCAAAATA
  AAAACATAGG GATCTTGTCC AAAGGCAGCA ATCCAAGCCA GCCGCAGCAA AATGTCACAC
  AACATCCACG GCCTTTTGGA GGGTGGCGCC TGTGCCCTGG GACCAGATTT GAGGTGGCCC
  AGGAGAGCTG ATAATTTATG GGTTCCAGTC AGCCCTTACT TTCTGAGTTG ATCAGAGTCT
  Y
  GGCCTTGCCC TGCAATGAAG AGCAGCCCGG GAAACAGAGA CCAGCAGAGT CGGTGCGGTG
  GGGGCAGCAG TGTTCCTGGC CAGGTGCACT GTGCCTCCAT CCAAGCAGCT GTGGAATAGC
  CTTGGAAAGT CGCGTGTTTT CCTCTTCTAT TTTTATTTCC TCAAATCTGG AACCAAGAGA
  GGCCAGCGCC AGAGTGCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37826142	NES08710310	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27636918					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37826142	NES08710310	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172707247 () rs orientation: forward

Symbol	Name	Function Class
1700055K11Rik	RIKEN cDNA 1700055K11 gene	1681 bp downstream
Cpgi12832	CpG island 12832	1741 bp distal
Gm56447	predicted gene, 56447	1113 bp upstream
Gm74706	predicted gene, 74706	within coordinates
Rr1066	regulatory region 1066	1287 bp downstream
Rr374298	regulatory region 374298	within coordinates
Rr407149	regulatory region 407149	1322 bp distal
Rr571761	regulatory region 571761	1390 bp distal
Rr571762	regulatory region 571762	691 bp distal
Rr571763	regulatory region 571763	82 bp proximal
Rr571764	regulatory region 571764	1341 bp proximal