rs27636920 SNP Detail

Summary

• ID
  rs27636920
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172707182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGAATGT CCTTGGTGAG
  TGACATGTGA AAGATGCCCC ACTCTAACCT TTGGGCACAG GATCTGTGGG GCCCCAGGCA
  AAATAAAAAC ATAGGGATCT TGTCCAAAGG CAGCAATCCA AGCCAGCCGC AGCAAAATGT
  CACACAACAT CCACGGCCTT TTGGAGGGTG GCGCCTGTGC CCTGGGACCA GATTTGAGGT
  R
  GCCCAGGAGA GCTGATAATT TATGGGTTCC AGTCAGCCCT TACTTTCTGA GTTGATCAGA
  GTCTTGGCCT TGCCCTGCAA TGAAGAGCAG CCCGGGAAAC AGAGACCAGC AGAGTCGGTG
  CGGTGGGGGC AGCAGTGTTC CTGGCCAGGT GCACTGTGCC TCCATCCAAG CAGCTGTGGA
  ATAGCCTTGG AAAGTCGCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37826144	NES08710308	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27636920					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37826144	NES08710308	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172707182 () rs orientation: forward

Symbol	Name	Function Class
1700055K11Rik	RIKEN cDNA 1700055K11 gene	1616 bp downstream
Cpgi12832	CpG island 12832	1676 bp distal
Gm56447	predicted gene, 56447	1048 bp upstream
Gm74706	predicted gene, 74706	within coordinates
Rr1066	regulatory region 1066	1222 bp downstream
Rr374298	regulatory region 374298	within coordinates
Rr407149	regulatory region 407149	1257 bp distal
Rr571761	regulatory region 571761	1325 bp distal
Rr571762	regulatory region 571762	626 bp distal
Rr571763	regulatory region 571763	147 bp proximal
Rr571764	regulatory region 571764	1406 bp proximal