rs27636922 SNP Detail

Summary

• ID
  rs27636922
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172707135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAGCACG CCATGCCCAA
  GACACCACCT AAGCTAACTC ACAGACTCTA AGAATGTCCT TGGTGAGTGA CATGTGAAAG
  ATGCCCCACT CTAACCTTTG GGCACAGGAT CTGTGGGGCC CCAGGCAAAA TAAAAACATA
  GGGATCTTGT CCAAAGGCAG CAATCCAAGC CAGCCGCAGC AAAATGTCAC ACAACATCCA
  S
  GGCCTTTTGG AGGGTGGCGC CTGTGCCCTG GGACCAGATT TGAGGTGGCC CAGGAGAGCT
  GATAATTTAT GGGTTCCAGT CAGCCCTTAC TTTCTGAGTT GATCAGAGTC TTGGCCTTGC
  CCTGCAATGA AGAGCAGCCC GGGAAACAGA GACCAGCAGA GTCGGTGCGG TGGGGGCAGC
  AGTGTTCCTG GCCAGGTGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37826146	NES08710307	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27636922					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37826146	NES08710307	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172707135 () rs orientation: forward

Symbol	Name	Function Class
1700055K11Rik	RIKEN cDNA 1700055K11 gene	1569 bp downstream
Cpgi12832	CpG island 12832	1629 bp distal
Gm56447	predicted gene, 56447	1001 bp upstream
Gm74706	predicted gene, 74706	within coordinates
Rr1066	regulatory region 1066	1175 bp downstream
Rr374298	regulatory region 374298	within coordinates
Rr407149	regulatory region 407149	1210 bp distal
Rr571761	regulatory region 571761	1278 bp distal
Rr571762	regulatory region 571762	579 bp distal
Rr571763	regulatory region 571763	194 bp proximal
Rr571764	regulatory region 571764	1453 bp proximal