rs27636924 SNP Detail

Summary

• ID
  rs27636924
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172706836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAACTGCA GACCCATGTC
  TCCAGCCCTC CACCCTCCTT TTTAGGAGAC TTTGAGCACA GGAAGTTTAA GCGACTGCGC
  CCAGCTCAGG ATAAGCCCGC CTTACACTCT GCCCCACCCC CTGCTTCTCA CGTGACCCAT
  GCCCACTCTT CCCCCTCCCA CTTCTGAGAG TCATAGCTTG AGAAGATCTT CTGGGACCCC
  R
  GGTACACTCT GGTGAGAGCT TGCTGGTGTC TGACGTTTTC CTTGATGGCT TATCCTTCTC
  TGTATTGTCA CCTGCAAAAG GACCTCATCC CCTGCTCTTC ACAGCACGCC ATGCCCAAGA
  CACCACCTAA GCTAACTCAC AGACTCTAAG AATGTCCTTG GTGAGTGACA TGTGAAAGAT
  GCCCCACTCT AACCTTTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37826148	NES08710305	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	A	A	G	A	A	A		G	A	G	G		G
ss45287205	mCV22950759	ABI	CRAMUS_MOUSE	f	SNP		G						A
ss320620582	CHEV_2_172690544	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27636924					SNP	G	G	G	A	A	A	G	A	A	A	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37826148	NES08710305	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172706836 () rs orientation: forward

Symbol	Name	Function Class
1700055K11Rik	RIKEN cDNA 1700055K11 gene	1270 bp downstream
Cpgi12832	CpG island 12832	1330 bp distal
Gm36254	predicted gene, 36254	1927 bp upstream
Gm56447	predicted gene, 56447	702 bp upstream
Gm74706	predicted gene, 74706	within coordinates
Rr1066	regulatory region 1066	876 bp downstream
Rr374298	regulatory region 374298	73 bp upstream
Rr407149	regulatory region 407149	911 bp distal
Rr571761	regulatory region 571761	979 bp distal
Rr571762	regulatory region 571762	280 bp distal
Rr571763	regulatory region 571763	493 bp proximal
Rr571764	regulatory region 571764	1752 bp proximal