rs27636925 SNP Detail

Summary

• ID
  rs27636925
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172705966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATGGAGG CTTTCTCCAA
  GGTCACCCGA CTGGTTGGTG CAGCACCCAC ATCTGCTGAC TCCCAGACGA CATCTAGTCA
  TTCAAACCCA TCCAGTCAGC AGTGCTGAGT GTGAGCTTCC ACTCAGTGAC ACAACTCGGA
  TAACATCACT GGTCACCAGT GGCCACCTGG GCCAGCAAGC CCTGTTCCTT CAGTCCTTGG
  R
  GCTGAAAGTT CAGCTCTCTT GACCCCAAGG GTCTTTCAGT CAACATTAAG AAACACCATA
  AAAGCCCAAC CATGGTGGTA CACACCTTTA ATCCCAGCAC TTGGGAGGCA GAGGCAGGCA
  GAGCTCTGTA AATTCAAGTC CAGCCTGGTC TACAAAGTGA GTTCTAGGCC TACACAGAGA
  AACCCTGTCT CAACCCCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37826149	NES08710399	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	G	G		G	G	G	G		G	G	A	G		A
ss45301553	mCV22950750	ABI	CRAMUS_MOUSE	f	SNP		A	A				G		G
ss148324434	ENSMUSSNP6510309	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
ss320620579	CHEV_2_172689674	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27636925					SNP	A	A	A	G	G	G	G	G	G	G	G	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37826149	NES08710399	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172705966 () rs orientation: forward

Symbol	Name	Function Class
1700055K11Rik	RIKEN cDNA 1700055K11 gene	400 bp downstream
Cpgi12832	CpG island 12832	460 bp distal
Gm36254	predicted gene, 36254	1057 bp upstream
Gm56447	predicted gene, 56447	91 bp downstream
Gm74706	predicted gene, 74706	within coordinates
Rr1066	regulatory region 1066	6 bp downstream
Rr374298	regulatory region 374298	943 bp upstream
Rr407149	regulatory region 407149	41 bp distal
Rr571760	regulatory region 571760	1670 bp distal
Rr571761	regulatory region 571761	109 bp distal
Rr571762	regulatory region 571762	569 bp proximal
Rr571763	regulatory region 571763	1363 bp proximal