rs27636927 SNP Detail

Summary

• ID
  rs27636927
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172705921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAACTCCC ACTGAGTTGT
  CAAACATTGC ATGGCCTGGA AGACCAGCAT GGAGGCTTTC TCCAAGGTCA CCCGACTGGT
  TGGTGCAGCA CCCACATCTG CTGACTCCCA GACGACATCT AGTCATTCAA ACCCATCCAG
  TCAGCAGTGC TGAGTGTGAG CTTCCACTCA GTGACACAAC TCGGATAACA TCACTGGTCA
  Y
  CAGTGGCCAC CTGGGCCAGC AAGCCCTGTT CCTTCAGTCC TTGGGGCTGA AAGTTCAGCT
  CTCTTGACCC CAAGGGTCTT TCAGTCAACA TTAAGAAACA CCATAAAAGC CCAACCATGG
  TGGTACACAC CTTTAATCCC AGCACTTGGG AGGCAGAGGC AGGCAGAGCT CTGTAAATTC
  AAGTCCAGCC TGGTCTACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37826151	NES08710397	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27636927					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37826151	NES08710397	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172705921 () rs orientation: forward

Symbol	Name	Function Class
1700055K11Rik	RIKEN cDNA 1700055K11 gene	355 bp downstream
Cpgi12832	CpG island 12832	415 bp distal
Gm36254	predicted gene, 36254	1012 bp upstream
Gm56447	predicted gene, 56447	136 bp downstream
Gm74706	predicted gene, 74706	within coordinates
Rr1066	regulatory region 1066	within coordinates
Rr374298	regulatory region 374298	988 bp upstream
Rr407149	regulatory region 407149	within coordinates
Rr571760	regulatory region 571760	1625 bp distal
Rr571761	regulatory region 571761	64 bp distal
Rr571762	regulatory region 571762	614 bp proximal
Rr571763	regulatory region 571763	1408 bp proximal