rs27636928 SNP Detail

Summary

• ID
  rs27636928
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172705487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGGGTCA GGGCTCACAT
  GTGTAATTCT CTGCTTCCTT CAGTGGCTGA AACCATTTTT TTACGCAGCC TTAACTGTTA
  GTTAAGCTGA ACGCTCACCA TCAAACGTCA GGTGGGAAGG TGCAGACCTC TGAGCTCATG
  GCGGCCAGGC TCCATGCCCC GCCATCCTCC ACCACCCTCC CACAGCCTCC ACCGCGCTCA
  Y
  GTAATCATCC TCGGAGAGTA TTTAGTCTGT TATTCGTGGC TTGCCTATGG CATTAAACAA
  TGACGTGAGT TTGGGCAAGC AGGCGGCTAA TGTGTCCTTC TTAGCCTCCC TAGTCACTTC
  CTACGAGAAA AACAGTACAG GAAACAGCTT GTGTGGAATG AAGGTCTCCG CTCCCTCAGA
  GCCCATGGTG TGCACATCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37826152	NES08710396	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27636928					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37826152	NES08710396	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172705487 () rs orientation: forward

Symbol	Name	Function Class
1700055K11Rik	RIKEN cDNA 1700055K11 gene	within coordinates
Cpgi12832	CpG island 12832	within coordinates
Gm36254	predicted gene, 36254	578 bp upstream
Gm56447	predicted gene, 56447	570 bp downstream
Gm74706	predicted gene, 74706	within coordinates
Rr1066	regulatory region 1066	within coordinates
Rr374298	regulatory region 374298	1422 bp upstream
Rr407149	regulatory region 407149	within coordinates
Rr571759	regulatory region 571759	1680 bp distal
Rr571760	regulatory region 571760	1191 bp distal
Rr571761	regulatory region 571761	within coordinates
Rr571762	regulatory region 571762	1048 bp proximal
Rr571763	regulatory region 571763	1842 bp proximal