rs27636965 SNP Detail

Summary

• ID
  rs27636965
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172696704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAGCTAT TTGAGATAGA
  ATTGGTTGGA TCCAGGGGCA GCCTGTGGGT GCAGTCTTTA CCCTCACGGA ACTCCAAGCA
  CTGCATAAAA TTCTTCTACT TAGGATCTCG TGTGGCCCTG AATGGCTTTG AACATGCACT
  GCAGCTGACG ATGCCTTGAA CTTCTCATCC TCCTGCCTCT GTCTTCCAGA TGCCGGGCTG
  M
  AGCTTAAAGG TCCTAGTGAG GTCTCAACAT TCTCAATGGC TTCTCAGCAA AAGGCCCCAA
  GCTCCCATGG TGCATCAGGC TCTGCCTTCA GCGGTGCTCT TCATTCAGCC CAGCTGCCTC
  TTCGGTTTTT GAGAATAAAC CTGGGGAAGT TAATACGCAG TACTGGATCG GCTGGAGAGT
  CTGGATGCGT GAGAGTCAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37826190	NES08710662	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	C	C	C	C	C	C		C	C	A	C		A
ss148324294	ENSMUSSNP579686	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						C
ss320620554	CHEV_2_172680412	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27636965					SNP	A	A	A	C	C	C	C	C	C	C	A	C	C	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37826190	NES08710662	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172696704 () rs orientation: forward

Symbol	Name	Function Class
Gm36254	predicted gene, 36254	within coordinates
Rr571755	regulatory region 571755	555 bp distal
Rr571756	regulatory region 571756	357 bp distal
Rr571757	regulatory region 571757	1342 bp proximal