rs27636966 SNP Detail

Summary

• ID
  rs27636966
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172696496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTAGCAC AAACAGCACG
  GTCCCTCTGC TGCTGCTGCC ACCAGTCCAT CCCACACTCA GACTGGCTCT GGACAACCAG
  CACCATGAAT GTCATACCCA TGTCTTACCT GGGGCAGGCA GACAAGAGTC AGACATTCTT
  AGAGGTAACC ATCAGGATGG GTTGTTCAGA GTCTGGCATA ACCCTATACA TTGCCACTGC
  R
  TGACAGATGC CAGCTATTTG AGATAGAATT GGTTGGATCC AGGGGCAGCC TGTGGGTGCA
  GTCTTTACCC TCACGGAACT CCAAGCACTG CATAAAATTC TTCTACTTAG GATCTCGTGT
  GGCCCTGAAT GGCTTTGAAC ATGCACTGCA GCTGACGATG CCTTGAACTT CTCATCCTCC
  TGCCTCTGTC TTCCAGATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37826191	NES08710694	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	G	G	G	G	G		G	G	A	G		A
ss148324279	ENSMUSSNP4647367	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				G
ss320620551	CHEV_2_172680204	CHEVERUD	SCREENING_POP	f	SNP									A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27636966					SNP	A	A	G	G	G	G	G	G	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37826191	NES08710694	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172696496 () rs orientation: forward

Symbol	Name	Function Class
Gm36254	predicted gene, 36254	within coordinates
Rr571755	regulatory region 571755	347 bp distal
Rr571756	regulatory region 571756	149 bp distal
Rr571757	regulatory region 571757	1550 bp proximal