rs27636967 SNP Detail

Summary

• ID
  rs27636967
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172696445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCACAATC CTGTGCCACC
  TTCTGCAGCC AGCTGAGCCC CACAGATGAC TTGCCTAGCA CAAACAGCAC GGTCCCTCTG
  CTGCTGCTGC CACCAGTCCA TCCCACACTC AGACTGGCTC TGGACAACCA GCACCATGAA
  TGTCATACCC ATGTCTTACC TGGGGCAGGC AGACAAGAGT CAGACATTCT TAGAGGTAAC
  Y
  ATCAGGATGG GTTGTTCAGA GTCTGGCATA ACCCTATACA TTGCCACTGC GTGACAGATG
  CCAGCTATTT GAGATAGAAT TGGTTGGATC CAGGGGCAGC CTGTGGGTGC AGTCTTTACC
  CTCACGGAAC TCCAAGCACT GCATAAAATT CTTCTACTTA GGATCTCGTG TGGCCCTGAA
  TGGCTTTGAA CATGCACTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37826192	NES08710693	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	C	C	C	C		C	C	T	C		T
ss148324273	ENSMUSSNP2024694	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				C
ss320620550	CHEV_2_172680153	CHEVERUD	SCREENING_POP	f	SNP									T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27636967					SNP	T	T	C	C	C	C	C	C	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37826192	NES08710693	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172696445 () rs orientation: forward

Symbol	Name	Function Class
Gm36254	predicted gene, 36254	within coordinates
Rr571755	regulatory region 571755	296 bp distal
Rr571756	regulatory region 571756	98 bp distal
Rr571757	regulatory region 571757	1601 bp proximal