rs27636969 SNP Detail

Summary

• ID
  rs27636969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172696314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGCTAGC CTCTGTTCTC
  CCCTTCTGCA TTGTCCTTGG ACTCCCCAGA GCCAGGGCCT GCCCCCAAAC ATGCCTGCGG
  TGTATTTGTT CCCTCCCTGA CTCACTTCCT TACTCCCCTC CCCACAACAC ATCCCACAAT
  CCTGTGCCAC CTTCTGCAGC CAGCTGAGCC CCACAGATGA CTTGCCTAGC ACAAACAGCA
  Y
  GGTCCCTCTG CTGCTGCTGC CACCAGTCCA TCCCACACTC AGACTGGCTC TGGACAACCA
  GCACCATGAA TGTCATACCC ATGTCTTACC TGGGGCAGGC AGACAAGAGT CAGACATTCT
  TAGAGGTAAC CATCAGGATG GGTTGTTCAG AGTCTGGCAT AACCCTATAC ATTGCCACTG
  CGTGACAGAT GCCAGCTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37826194	NES08710691	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27636969					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37826194	NES08710691	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172696314 () rs orientation: forward

Symbol	Name	Function Class
Gm36254	predicted gene, 36254	within coordinates
Rr571755	regulatory region 571755	165 bp distal
Rr571756	regulatory region 571756	within coordinates
Rr571757	regulatory region 571757	1732 bp proximal