rs27636971 SNP Detail

Summary

• ID
  rs27636971
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172694194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAG GTCGTACAAT CCCAGGGATA
  R
  TCAGATAGAT ACACTTTGGA AGGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37826196	NES08710721	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A		A	A	A	G	G	G
ss45322485	mCV23610929	ABI	CRAMUS_MOUSE	f	SNP		G			G	A
ss148324231	ENSMUSSNP6829003	ENSEMBL	ENSEMBL_Sanger	f	SNP		G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27636971					SNP	G	G	G	A	G	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37826196	NES08710721	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172694194 () rs orientation: forward

Symbol	Name	Function Class
Gm36254	predicted gene, 36254	within coordinates
Rr571755	regulatory region 571755	1731 bp proximal
Rr571756	regulatory region 571756	1956 bp proximal