rs27640108 SNP Detail

Summary

• ID
  rs27640108
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180434661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGA AGATACTGCT TCTCATGGTT
  R
  CTCGCAACTT TTAATAAGCT GGCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
ss37834427	NES08688261	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G		G	G	G	A
ss45261057	mCV23365406	ABI	CRAMUS_MOUSE	f	SNP		G				A	G
ss148393375	ENSMUSSNP2250828	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
rs27640108					SNP	A	G	G	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37834427	NES08688261	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180434661 () rs orientation: forward

Symbol	Name	Function Class
D2Mit463	DNA Segment, Chr 2, Massachusetts Institute of Technology-463	1586 bp proximal
Gm75401	predicted gene, 75401	within coordinates
Rr572849	regulatory region 572849	859 bp distal
Rr572850	regulatory region 572850	955 bp distal