rs27640111 SNP Detail

Summary

• ID
  rs27640111
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180433525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTCTCCT CTATGACCCC
  ACCAGATGCT AAGTTTCCTT AGGACCTCCT TCCAGGGTCT TAACTTCATT AAGATACCCT
  CTTAGGATTC TGAACTCTAT GAGCCCCAAC TATGGCCTCA ATTCCTACTG GAACCCCCAG
  GACCCCAGCC CCTGGCAAGG CCCCTTTCCC AGGAACACGG CCTTCACGGA GCCTCACATC
  Y
  AGGACCTGAA CTCCTCTAGA GCCTCCTCTA GGACTCTGAG CCTTTTGGGG ATCCTCTCCC
  AATCTCCATT AGTACCTTCT CCCCATCCTG GCATCCTCTG TGCAAGGTGG GGGGTGGGAG
  GAAAGACTGC ACAATTCAGA GGCCATGCAG TCATCCTCTG TAGTGCCACC TTGTGGCGAC
  ATGTGGGCAG TGCTAGTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37834430	NES08688313	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27640111					SNP	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37834430	NES08688313	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180433525 () rs orientation: forward

Symbol	Name	Function Class
Gm75401	predicted gene, 75401	within coordinates
Rr572849	regulatory region 572849	28 bp proximal
Rr572850	regulatory region 572850	160 bp proximal