rs27640113 SNP Detail

Summary

• ID
  rs27640113
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180432411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAGAATG CCTTATGCTA
  ACCTGGAAAG AGGTATCCCT GGTGGGGTGT GATCATGTAA TTCTAAGGAG ACTTCACAGA
  GGAGGCAGCC ACTGGGCTGC ATTCTACTTG AGTAGAGAGC TGGTGTCTGT GGGAAACTCT
  CTTCTTTGGT CCTAGAAGCA GCTGACACAG ACATCCTGTG CCTCTCCATT CTGTTTCGTG
  Y
  TGCCCAACCC AGTTGAGGTG AGGCAGGGAC AGCTCTGAGC CCAGGGCAGC TTAAACTCTT
  GTCAGCCTTC CTCCTATTCC AAGTCTCCCC TGCAATAGGA TCTGCACTCA CCCAACTGAA
  GGGCTGGATC CAGAATGTCT CATCCTATGC ACAGCTGACC CTCTGCGTCT AGTGATTGGT
  CTTCCAGGGC TGGTCTCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ
ss37834432	NES08688366	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ
rs27640113					SNP	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37834432	NES08688366	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180432411 () rs orientation: forward

Symbol	Name	Function Class
Gm75401	predicted gene, 75401	within coordinates
Rr572848	regulatory region 572848	1342 bp distal
Rr572849	regulatory region 572849	1142 bp proximal
Rr572850	regulatory region 572850	1274 bp proximal