rs27641674 SNP Detail

Summary

• ID
  rs27641674
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:179989261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCCTGCT TTTGTTTGGT
  AGTGTCTAGT GTGCGACGGG CGCCCCCTGG TGGCCATACT GAACATTTCC TTGAGAGGTG
  GGGCCTGCAG GGTTTGGGGA GTCAGGTTTG TTGCCAGGAG GTCCCTGCAG CTGGCTAGCC
  ACGAGGCTTT AGGTCCTAGG ATCAGTGGGC TTCCAGCCCC ATGGAAAATG CGAGAGCAAG
  W
  TTCACTAGGG CCACACAGTA TCATTGAGCA CTGAGCGTGG AAGGAGACAG ATGGGCCACG
  TTTCTCCTCC CTCTTTCTAG CCTTCCTTCT CCCTCCCTTT TCTTATACAT TATATCCTGG
  CGGCAGTTTT CCCTCCCTCC ACTCCTCCCA GTTCCTTCCC CACTTCCATT CTCCCCCAGA
  TCCATTCCTC TTATGCCCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37836493	NES08685862	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	A	T	A	A	T	T	T		T	A	T		A
ss320631891	CHEV_2_180082173	CHEVERUD	SCREENING_POP	f	SNP											T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27641674					SNP	A	T	T	A	T	A	A	T	T	T	T	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37836493	NES08685862	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179989261 () rs orientation: forward

Symbol	Name	Function Class
Gm52543	predicted gene, 52543	977 bp upstream
Gm75553	predicted gene, 75553	within coordinates
Rr572721	regulatory region 572721	within coordinates
Rr572722	regulatory region 572722	143 bp distal