rs27641685 SNP Detail

Summary

• ID
  rs27641685
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:179988754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCT TCTCTCTGCA GTGAGAGGAG
  R
  TGGTGGGCCC TACTCCATGG TCAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J
ss37836504	NES08685847	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	A	A	G	A		A
ss148390600	ENSMUSSNP2621133	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A				A
ss320631887	CHEV_2_180081666	CHEVERUD	SCREENING_POP	f	SNP										A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J
rs27641685					SNP	G	G	A	A	G	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37836504	NES08685847	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179988754 () rs orientation: forward

Symbol	Name	Function Class
Gm52543	predicted gene, 52543	470 bp upstream
Gm75553	predicted gene, 75553	within coordinates
Rr572721	regulatory region 572721	within coordinates
Rr572722	regulatory region 572722	343 bp proximal